San Borja is the seat of the San Borja Municipality, the second municipal section of the Jos� Ballivi�n Province. The town is located at an elevation of 197 m on the left bank of R�o Maniqui, a tributary of R�o Rapulo which flows into R�o Mamor�.
By road, San Borja is situated 230 km west of the department's capital, Trinidad.
San Borja is connected towards the southwest with Yucumo situated on the road and a bus route La Paz - Yolosa/Coroico - Caranavi -Rurrenabaque. Yucumo is halfway between Caranavi and Rurrenabaque. Towards the east of San Borja Route 3 leads to San Ignacio de Moxosand farther to Trinidad, the capital of the Beni Department.
The airport of San Borja has regular services from two airlines: L�nea A�rea Amaszonas and TAM - Transporte A�reo Militar (the Bolivian Military Airline)